PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000133028
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family SRS
Protein Properties Length: 447aa    MW: 46245.5 Da    PI: 7.6363
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000133028genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702187.36e-582774253141
         DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaesk 97 
                    s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aaa   a +++ +++++k++r l  ++q+++s+t++s+++++
  MDP0000133028 277 SSTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSAAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTSNTTPP 371
                    6789*************************************************9999999999884445555555.5699999************* PP

         DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGh 141
                    ++ +tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+i+G 
  MDP0000133028 372 RSYDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKINGS 425
                    *****999********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-51279425IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.1E-27281323IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.9E-18389424IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDMDPQAEAE APSPSVSISD QKRLPSDSGA FADWVGSSSS NNAAATGRST THHPDIDVLS  60
LGFNAGPAPA GPSSAXPSTM SMWSSXPSSR PLTYGHVPPE MAGMVGLRDV FVVAPAAAYH  120
HNTHLHHHYG HDPNLLSSSD HHHSINASNN PATALGVGVI PLLTAAPCLA PPNMSNVDDD  180
DEDTHTPAGM SMGMGMSMGM GMMSGGHQRN NRSSSAAAAG GGGGIQLWQQ NPPHFFKKTH  240
HEAAVTTDLG VAHLNQGGGG GGNNVINAGS AAASSGSSTM TCQDCGNQAK KDCTHRRCRT  300
CCKSRGFDCA THVKSTWVPA ARRRERQLMS AAAGGGAGSN SGSTSSAKKP RLIGASQTTT  360
SHTSTSNTTP PRSYDTSSSH QDAGFKDPLP GQVRAPAVFK CVRVTAVEDG EDEYAYQAVV  420
KINGSLACSS TIKDRRKCGN GDNCRLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356345.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLM5WND71e-161M5WND7_PRUPE; Uncharacterized protein
STRINGVIT_06s0009g03450.t012e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-53Lateral root primordium (LRP) protein-related